DGtal  0.9.4.1
ImplicitPolynomial3Shape.ih
1 /**
2  * This program is free software: you can redistribute it and/or modify
3  * it under the terms of the GNU Lesser General Public License as
4  * published by the Free Software Foundation, either version 3 of the
5  * License, or (at your option) any later version.
6  *
7  * This program is distributed in the hope that it will be useful,
8  * but WITHOUT ANY WARRANTY; without even the implied warranty of
9  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
10  * GNU General Public License for more details.
11  *
12  * You should have received a copy of the GNU General Public License
13  * along with this program. If not, see <http://www.gnu.org/licenses/>.
14  *
15  **/
16 
17 /**
18  * @file ImplicitPolynomial3Shape.ih
19  * @author Jacques-Olivier Lachaud (\c jacques-olivier.lachaud@univ-savoie.fr )
20  * Laboratory of Mathematics (CNRS, UMR 5807), University of Savoie, France
21  *
22  * @date 2012/02/14
23  *
24  * Implementation of inline methods defined in ImplicitPolynomial3Shape.h
25  *
26  * This file is part of the DGtal library.
27  */
28 
29 
30 //////////////////////////////////////////////////////////////////////////////
31 #include <cstdlib>
32 //////////////////////////////////////////////////////////////////////////////
33 
34 ///////////////////////////////////////////////////////////////////////////////
35 // IMPLEMENTATION of inline methods.
36 ///////////////////////////////////////////////////////////////////////////////
37 
38 ///////////////////////////////////////////////////////////////////////////////
39 // ----------------------- Standard services ------------------------------
40 
41 //-----------------------------------------------------------------------------
42 template <typename TSpace>
43 inline
44 DGtal::ImplicitPolynomial3Shape<TSpace>::~ImplicitPolynomial3Shape()
45 {
46 }
47 //-----------------------------------------------------------------------------
48 template <typename TSpace>
49 inline
50 DGtal::ImplicitPolynomial3Shape<TSpace>::
51 ImplicitPolynomial3Shape( const Polynomial3 & poly )
52 {
53  init( poly );
54 }
55 //-----------------------------------------------------------------------------
56 template <typename TSpace>
57 inline
58 DGtal::ImplicitPolynomial3Shape<TSpace> &
59 DGtal::ImplicitPolynomial3Shape<TSpace>::
60 operator=( const ImplicitPolynomial3Shape & other )
61 {
62  if ( this != &other )
63  {
64  myPolynomial = other.myPolynomial;
65 
66  myFx= other.myFx;
67  myFy= other.myFy;
68  myFz= other.myFz;
69 
70  myFxx= other.myFxx;
71  myFxy= other.myFxy;
72  myFxz= other.myFxz;
73 
74  myFyx= other.myFyx;
75  myFyy= other.myFyy;
76  myFyz= other.myFyz;
77 
78  myFzx= other.myFzx;
79  myFzy= other.myFzy;
80  myFzz= other.myFzz;
81 
82  myUpPolynome = other.myUpPolynome;
83  myLowPolynome = other.myLowPolynome;
84  }
85  return *this;
86 }
87 //-----------------------------------------------------------------------------
88 template <typename TSpace>
89 inline
90 void
91 DGtal::ImplicitPolynomial3Shape<TSpace>::
92 init( const Polynomial3 & poly )
93 {
94  myPolynomial = poly;
95 
96  myFx= derivative<0>( poly );
97  myFy= derivative<1>( poly );
98  myFz= derivative<2>( poly );
99 
100  myFxx= derivative<0>( myFx );
101  myFxy= derivative<1>( myFx );
102  myFxz= derivative<2>( myFx);
103 
104  myFyx= derivative<0>( myFy );
105  myFyy= derivative<1>( myFy );
106  myFyz= derivative<2>( myFy );
107 
108  myFzx= derivative<0>( myFz );
109  myFzy= derivative<1>( myFz );
110  myFzz= derivative<2>( myFz );
111 
112  // These two polynomials are used for mean curvature estimation.
113  myUpPolynome = myFx*(myFx*myFxx+myFy*myFyx+myFz*myFzx)+
114  myFy*(myFx*myFxy+myFy*myFyy+myFz*myFzy)+
115  myFz*(myFx*myFxz+myFy*myFyz+myFz*myFzz)-
116  ( myFx*myFx +myFy*myFy+myFz*myFz )*(myFxx+myFyy+myFzz);
117 
118  myLowPolynome = myFx*myFx +myFy*myFy+myFz*myFz;
119 }
120 //-----------------------------------------------------------------------------
121 template <typename TSpace>
122 inline
123 double
124 DGtal::ImplicitPolynomial3Shape<TSpace>::
125 operator()(const RealPoint &aPoint) const
126 {
127  return myPolynomial( aPoint[ 0 ] )( aPoint[ 1 ] )( aPoint[ 2 ] );
128 }
129 //-----------------------------------------------------------------------------
130 template <typename TSpace>
131 inline
132 bool
133 DGtal::ImplicitPolynomial3Shape<TSpace>::
134 isInside(const RealPoint &aPoint) const
135 {
136  return orientation( aPoint ) == INSIDE;
137 }
138 //-----------------------------------------------------------------------------
139 template <typename TSpace>
140 inline
141 DGtal::Orientation
142 DGtal::ImplicitPolynomial3Shape<TSpace>::
143 orientation(const RealPoint &aPoint) const
144 {
145  Ring v = this->operator()(aPoint);
146  if ( v < (Ring)0 )
147  return INSIDE;
148  else if ( v > (Ring)0 )
149  return OUTSIDE;
150  else
151  return ON;
152 }
153 //-----------------------------------------------------------------------------
154 template <typename TSpace>
155 inline
156 typename DGtal::ImplicitPolynomial3Shape<TSpace>::RealVector
157 DGtal::ImplicitPolynomial3Shape<TSpace>::
158 gradient( const RealPoint &aPoint ) const
159 {
160  // ISO C++ tells that an object created at return time will not be
161  // copied into the caller context, but will be already defined in
162  // the correct context.
163  return RealVector
164  ( myFx ( aPoint[ 0 ] )( aPoint[ 1 ] )( aPoint[ 2 ] ),
165  myFy ( aPoint[ 0 ] )( aPoint[ 1 ] )( aPoint[ 2 ] ),
166  myFz ( aPoint[ 0 ] )( aPoint[ 1 ] )( aPoint[ 2 ] ) );
167 
168 }
169 
170 
171 // ------------------------------------------------------------ Added by Anis Benyoub
172 //-----------------------------------------------------------------------------
173 
174 /**
175  * @param aPoint any point in the Euclidean space.
176  * This computation is based on the hessian formula of the mean curvature
177  * k=-(∇F ∗ H (F ) ∗ ∇F T − |∇F |^2 *Trace(H (F ))/2|∇F |^3
178  * we define it as positive for a sphere
179  * @return the mean curvature value of the polynomial at \a aPoint.
180  *
181 */
182 template <typename TSpace>
183 inline
184 double
185 DGtal::ImplicitPolynomial3Shape<TSpace>::
186 meanCurvature( const RealPoint &aPoint ) const
187 {
188  double temp= myLowPolynome( aPoint[ 0 ] )( aPoint[ 1 ] )( aPoint[ 2 ] );
189  temp = sqrt(temp);
190  double downValue = 2.0*(temp*temp*temp);
191  double upValue = myUpPolynome( aPoint[ 0 ] )( aPoint[ 1 ] )( aPoint[ 2 ] );
192 
193 
194  return -(upValue/downValue);
195 }
196 
197 
198 
199 //-----------------------------------------------------------------------------
200 template <typename TSpace>
201 inline
202 double
203 DGtal::ImplicitPolynomial3Shape<TSpace>::
204 gaussianCurvature( const RealPoint &aPoint ) const
205 {
206  /*
207  JOL: new Gaussian curvature formula (in sage)
208  var('Fx','Fy','Fz','Fxx','Fxy','Fxz','Fyy','Fyz','Fzz')
209  M=Matrix(4,4,[[Fxx,Fxy,Fxz,Fx],[Fxy,Fyy,Fyz,Fy],[Fxz,Fyz,Fzz,Fz],[Fx,Fy,Fz,0]])
210  det(M)
211 # Fxz^2*Fy^2 - 2*Fx*Fxz*Fy*Fyz + Fx^2*Fyz^2 - 2*Fxy*Fxz*Fy*Fz + 2*Fx*Fxz*Fyy*Fz - 2*Fx*Fxy*Fyz*Fz + 2*Fxx*Fy*Fyz*Fz + Fxy^2*Fz^2 - Fxx*Fyy*Fz^2 + 2*Fx*Fxy*Fy*Fzz - Fxx*Fy^2*Fzz - Fx^2*Fyy*Fzz
212  G = -det(M) / ( Fx^2 + Fy^2 + Fz^2 )^2
213  */
214  const double x = aPoint[ 0 ];
215  const double y = aPoint[ 1 ];
216  const double z = aPoint[ 2 ];
217  const double Fx = myFx( x )( y )( z );
218  const double Fy = myFy( x )( y )( z );
219  const double Fz = myFz( x )( y )( z );
220  const double Fx2 = Fx * Fx;
221  const double Fy2 = Fy * Fy;
222  const double Fz2 = Fz * Fz;
223  const double G2 = Fx2 + Fy2 + Fz2;
224  const double Fxx = myFxx( x )( y )( z );
225  const double Fxy = myFxy( x )( y )( z );
226  const double Fxz = myFxz( x )( y )( z );
227  const double Fyy = myFyy( x )( y )( z );
228  const double Fyz = myFyz( x )( y )( z );
229  const double Fzz = myFzz( x )( y )( z );
230  const double Ax2 = ( Fyz * Fyz - Fyy * Fzz ) * Fx2;
231  const double Ay2 = ( Fxz * Fxz - Fxx * Fzz ) * Fy2;
232  const double Az2 = ( Fxy * Fxy - Fxx * Fyy ) * Fz2;
233  const double Axy = ( Fxy * Fzz - Fxz * Fyz ) * Fx * Fy;
234  const double Axz = ( Fxz * Fyy - Fxy * Fyz ) * Fx * Fz;
235  const double Ayz = ( Fxx * Fyz - Fxy * Fxz ) * Fy * Fz;
236  const double det = Ax2 + Ay2 + Az2 + 2 * ( Axy + Axz + Ayz );
237  return - det / ( G2*G2 );
238 }
239 
240 template< typename TSpace >
241 inline
242 void
243 DGtal::ImplicitPolynomial3Shape<TSpace>::principalCurvatures
244 ( const RealPoint & aPoint,
245  double & k1,
246  double & k2 ) const
247 {
248  double H = meanCurvature( aPoint );
249  double G = gaussianCurvature( aPoint );
250  double tmp = std::sqrt( fabs( H * H - G ));
251  k2 = H + tmp;
252  k1 = H - tmp;
253 }
254 
255 
256 /**
257  *@param aPoint any point in the Euclidean space.
258  *@param accuracy refers to the precision
259  *@param maxIter refers to the maximum iterations the fonction user authorises
260  *@param gamma refers to the step
261  *@return the nearest point on the surface to the one given in parameter.
262  */
263 template <typename TSpace>
264 inline
265 typename DGtal::ImplicitPolynomial3Shape<TSpace>::RealPoint
266 DGtal::ImplicitPolynomial3Shape<TSpace>::nearestPoint
267 ( const RealPoint &aPoint, const double accuracy,
268  const int maxIter, const double gamma ) const
269 {
270  RealPoint X = aPoint;
271  for ( int numberIter = 0; numberIter < maxIter; numberIter++ )
272  {
273  double val_X = (*this)( X );
274  if ( fabs( val_X ) < accuracy ) break;
275  RealVector grad_X = (*this).gradient( X );
276  double n2_grad_X = grad_X.dot( grad_X );
277  if ( n2_grad_X > 0.000001 ) grad_X /= n2_grad_X;
278  X -= val_X * gamma * grad_X ;
279  }
280  return X;
281 }
282 
283 ///////////////////////////////////////////////////////////////////////////////
284 // Interface - public :
285 
286 /**
287  * Writes/Displays the object on an output stream.
288  * @param out the output stream where the object is written.
289  */
290 template <typename TSpace>
291 inline
292 void
293 DGtal::ImplicitPolynomial3Shape<TSpace>::selfDisplay ( std::ostream & out ) const
294 {
295  out << "[ImplicitPolynomial3Shape] P(x,y,z) = " << myPolynomial;
296 }
297 
298 /**
299  * Checks the validity/consistency of the object.
300  * @return 'true' if the object is valid, 'false' otherwise.
301  */
302 template <typename TSpace>
303 inline
304 bool
305 DGtal::ImplicitPolynomial3Shape<TSpace>::isValid() const
306 {
307  return true;
308 }
309 
310 
311 
312 ///////////////////////////////////////////////////////////////////////////////
313 // Implementation of inline functions //
314 
315 template <typename TSpace>
316 inline
317 std::ostream&
318 DGtal::operator<< ( std::ostream & out,
319  const ImplicitPolynomial3Shape<TSpace> & object )
320 {
321  object.selfDisplay( out );
322  return out;
323 }
324 
325 // //
326 ///////////////////////////////////////////////////////////////////////////////
327 
328 
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