exampleSurfaceATNormals.cpp File Reference

#include <iostream>
#include "ConfigExamples.h"
#include "DGtal/base/Common.h"
#include "DGtal/helpers/StdDefs.h"
#include "DGtal/helpers/Shortcuts.h"
#include "DGtal/helpers/ShortcutsGeometry.h"
#include "DGtal/dec/ATSolver2D.h"
#include "DGtal/dec/DiscreteExteriorCalculusFactory.h"

Include dependency graph for exampleSurfaceATNormals.cpp:

Go to the source code of this file.

Functions
int	main (int argc, char **argv)

Detailed Description

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.

Author

Jacques-Olivier Lachaud (jacqu.nosp@m.es-o.nosp@m.livie.nosp@m.r.la.nosp@m.chaud.nosp@m.@uni.nosp@m.v-sav.nosp@m.oie..nosp@m.fr ) Laboratory of Mathematics (CNRS, UMR 5127), University of Savoie, France

Date

2019/06/09

An example file named exampleSurfaceATNormals.

This file is part of the DGtal library.

Definition in file exampleSurfaceATNormals.cpp.

Function Documentation

main()

int main	(	int	argc,
		char **	argv
	)

[AT-surface-init]

[AT-surface-init]

[AT-surface-calculus]

[AT-surface-calculus] [AT-surface-solve]

[AT-surface-solve]

[AT-surface-getU2]

[AT-surface-getU2]

[AT-surface-getV0]

[AT-surface-getV0]

Definition at line 48 of file exampleSurfaceATNormals.cpp.

{
  typedef Z3i::KSpace                      KSpace;
  typedef Shortcuts< KSpace >              SH3;
  typedef ShortcutsGeometry< KSpace >      SHG3;
  typedef SH3::Surfel                      Surfel;
  typedef SH3::Cell                        Cell;
  typedef SHG3::RealVector                 RealVector;
 
  const double alpha_at  = 0.1;
  const double lambda_at = 0.01;
  const double e1        = 2.0;
  const double e2        = 0.25;
  const double er        = 2.0;
 
  const string   volfile = argc > 1 ? argv[ 1 ] : examplesPath + "samples/Al.100.vol";
  const double threshold = argc > 2 ? atof( argv[ 2 ] ) : 0.5;
  trace.beginBlock ( "Load vol file -> build digital surface -> estimate II normals." );
  auto params    = SH3::defaultParameters() | SHG3::defaultParameters();
  auto bimage    = SH3::makeBinaryImage( volfile, params );
  auto K         = SH3::getKSpace( bimage, params );
  auto surface   = SH3::makeDigitalSurface( bimage, K, params );
  auto surfels   = SH3::getSurfelRange( surface, params );
  auto linels    = SH3::getCellRange( surface, 1 );
  auto ii_normals= SHG3::getIINormalVectors( bimage, surfels, params );
  auto uembedder = SH3::getCellEmbedder( K );
  auto embedder  = SH3::getSCellEmbedder( K );
  trace.endBlock();
 
  trace.beginBlock ( "Creating AT solver for digital surface" );
  typedef DiscreteExteriorCalculusFactory<EigenLinearAlgebraBackend> CalculusFactory;
  const auto calculus = CalculusFactory::createFromNSCells<2>( surfels.begin(), surfels.end() );
  ATSolver2D< KSpace > at_solver(calculus, 1);
  at_solver.initInputVectorFieldU2( ii_normals, surfels.cbegin(), surfels.cend() );
  at_solver.setUp( alpha_at, lambda_at );
  at_solver.solveGammaConvergence( e1, e2, er );
  trace.endBlock();
 
  trace.beginBlock ( "Save AT normals as OBJ file" );
  auto at_normals = ii_normals;
  at_solver.getOutputVectorFieldU2( at_normals, surfels.cbegin(), surfels.cend() );
  SH3::RealPoints positions( surfels.size() );
  std::transform( surfels.cbegin(), surfels.cend(), positions.begin(),
                  [&] (const SH3::SCell& c) { return embedder( c ); } );
  SH3::Colors colors( surfels.size() );
  for ( size_t i = 0; i < surfels.size(); i++ )
    colors[ i ] = SH3::Color( (unsigned char) 255.0*fabs( at_normals[ i ][ 0 ] ),
                              (unsigned char) 255.0*fabs( at_normals[ i ][ 1 ] ),
                              (unsigned char) 255.0*fabs( at_normals[ i ][ 2 ] ) );
  std::transform( surfels.cbegin(), surfels.cend(), positions.begin(),
                  [&] (const SH3::SCell& c) { return embedder( c ); } );
 
  bool ok1  = SH3::saveOBJ( surface, at_normals, SH3::Colors(),
                            "output-surface.obj" );
  bool ok2 = SH3::saveOBJ( surface, at_normals, colors,
                           "output-surface-at-normals.obj" );
  bool ok3 = SH3::saveVectorFieldOBJ( positions, at_normals, 0.05, SH3::Colors(),
                                      "output-vf-at-normals.obj",
                                      SH3::Color( 0, 0, 0 ), SH3::Color::Red );
  SH3::Scalars features( linels.size() );
  at_solver.getOutputScalarFieldV0( features, linels.cbegin(), linels.cend(),
                                    at_solver.Maximum );
  SH3::RealPoints  f0;
  SH3::RealVectors f1;
  for ( size_t i = 0; i < linels.size(); i++ )
    {
      if ( features[ i ] < threshold )
        {
          const Cell  linel = linels[ i ];
          const Dimension d = * K.uDirs( linel );
          const Cell     p0 = K.uIncident( linel, d, false );
          const Cell     p1 = K.uIncident( linel, d, true  );
          f0.push_back( uembedder( p0 ) );
          f1.push_back( uembedder( p1 ) - uembedder( p0 ) );
        }
    }
  bool ok4 = SH3::saveVectorFieldOBJ( f0, f1, 0.1, SH3::Colors(),
                                      "output-features.obj",
                                      SH3::Color( 0, 0, 0 ), SH3::Color::Red );
 
  trace.endBlock();
  return 0;
}

References DGtal::Trace::beginBlock(), DGtal::Shortcuts< TKSpace >::defaultParameters(), DGtal::ShortcutsGeometry< TKSpace >::defaultParameters(), DGtal::Trace::endBlock(), DGtal::Shortcuts< TKSpace >::getCellEmbedder(), DGtal::Shortcuts< TKSpace >::getCellRange(), DGtal::ShortcutsGeometry< TKSpace >::getIINormalVectors(), DGtal::Shortcuts< TKSpace >::getKSpace(), DGtal::ATSolver2D< TKSpace, TLinearAlgebra >::getOutputScalarFieldV0(), DGtal::ATSolver2D< TKSpace, TLinearAlgebra >::getOutputVectorFieldU2(), DGtal::Shortcuts< TKSpace >::getSCellEmbedder(), DGtal::Shortcuts< TKSpace >::getSurfelRange(), DGtal::ATSolver2D< TKSpace, TLinearAlgebra >::initInputVectorFieldU2(), K, DGtal::Shortcuts< TKSpace >::makeBinaryImage(), DGtal::Shortcuts< TKSpace >::makeDigitalSurface(), DGtal::ATSolver2D< TKSpace, TLinearAlgebra >::Maximum, DGtal::Color::Red, DGtal::Shortcuts< TKSpace >::saveOBJ(), DGtal::Shortcuts< TKSpace >::saveVectorFieldOBJ(), DGtal::ATSolver2D< TKSpace, TLinearAlgebra >::setUp(), DGtal::ATSolver2D< TKSpace, TLinearAlgebra >::solveGammaConvergence(), DGtal::trace, DGtal::KhalimskySpaceND< dim, TInteger >::uDirs(), and DGtal::KhalimskySpaceND< dim, TInteger >::uIncident().