homotopicThinning3D

Applies an homotopic thinning of a 3d image file (vol,longvol,pgm3d...) with 3D viewer.

Usage: homotopicThinning3d [options] –input <3dImageFileName> {vol,longvol,pgm3d...}

Allowed options are :

-h [ --help ]              display this message.
-i [ --input ] arg         Input volumetric file (.vol, .pgm3d or p3d)
-m [ --min ] arg (=0)      Minimum (excluded) value for threshold.
-M [ --max ] arg (=255)    Maximum (included) value for threshold.
-e [ --exportSDP ] arg     Export the resulting set of points in a simple 
                           (sequence of discrete point (sdp)).
--fixedPoints arg          defines the coordinates of points which should not
                           be removed.
-s [ --fixedPointSDP ] arg use fixed points from a file.

Example:

Usage by forcing point to be left by the thinning:

$  homotopicThinning3D --input ${DGtal}/examples/samples/Al.100.vol  --fixedPoints 56 35 5  56 61 5  57 91 38  58 8 38  45 50 97 

You should obtain such a result:

Resulting visualization.

See also

homotopicThinning3D.cpp